STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_1149PFAM: peptidase M50; KEGG: eca:ECA0803 hypothetical protein. (714 aa)    
Predicted Functional Partners:
Mmc1_1150
PFAM: outer membrane efflux protein; Sporulation domain protein; KEGG: cvi:CV0465 hypothetical protein.
 
   0.942
Mmc1_1151
KEGG: cvi:CV0466 hypothetical protein.
 
     0.858
Mmc1_0420
PFAM: outer membrane efflux protein; KEGG: mag:amb3276 outer membrane protein.
 
   0.851
Mmc1_1154
KEGG: pfo:Pfl_0146 hypothetical protein.
     0.796
Mmc1_0419
KEGG: mag:amb3274 membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.774
Mmc1_2199
KEGG: cch:Cag_1408 membrane-fusion protein-like.
 
     0.748
Mmc1_2177
KEGG: sil:SPO2715 GAF domain protein.
 
     0.742
Mmc1_0421
PFAM: Cadherin; SMART: Dystroglycan-type cadherin domain protein; KEGG: mag:amb3277 RTX toxins and related Ca2+-binding protein.
 
    0.666
Mmc1_2196
PFAM: Hemolysin-type calcium-binding region; glycosyl hydrolase, BNR repeat-containing protein; Haemagluttinin repeat-containing protein; KEGG: cch:Cag_0616 parallel beta-helix repeat.
 
     0.619
Mmc1_2179
TIGRFAM: putative outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; pentapeptide repeat protein; TMP repeat-containing protein; KEGG: mag:amb1268 large exoprotein.
  
     0.614
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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