STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_1300PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: DNA/RNA helicase. (560 aa)    
Predicted Functional Partners:
Mmc1_1297
KEGG: hch:HCH_05689 hypothetical protein.
 
 
   0.807
Mmc1_1303
KEGG: rso:RSc3231 hypothetical protein.
 
     0.802
Mmc1_1298
KEGG: hch:HCH_05688 hypothetical protein.
 
     0.789
Mmc1_1299
KEGG: hypothetical protein.
       0.773
Mmc1_1301
Hypothetical protein.
       0.773
Mmc1_1304
Plasmid and phage DNA primase / plasmid and phage replicative helicase; PFAM: TOPRIM domain protein; KEGG: wol:WD0609 regulatory protein RepA, putative.
   
   0.756
Mmc1_1296
KEGG: nwi:Nwi_1961 hypothetical protein.
       0.755
Mmc1_1302
KEGG: sfx:S1991 hypothetical bacteriophage protein.
       0.723
Mmc1_0636
SMART: helicase c2; DEAD-like helicases-like; KEGG: dar:Daro_1779 helicase c2:DEAD/DEAH box helicase, N-terminal.
   
 0.585
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.584
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.