STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_1538PFAM: GAF domain protein; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mag:amb3625 methyl-accepting chemotaxis protein. (1004 aa)    
Predicted Functional Partners:
Mmc1_1858
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: mfa:Mfla_2129 adenylate/guanylate cyclase.
 
     0.696
Mmc1_1113
KEGG: mfa:Mfla_1127 hypothetical protein.
 
     0.680
Mmc1_1112
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: pol:Bpro_0721 adenylate/guanylate cyclase.
     0.662
Mmc1_3697
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: mag:amb2235 adenylate cyclase.
 
     0.629
Mmc1_1583
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase, HAMP region domain protein; KEGG: lil:LA3234 adenylate cyclase.
 
     0.549
Mmc1_3215
PFAM: beta-lactamase domain protein; KEGG: rfr:Rfer_1985 beta-lactamase-like.
  
     0.492
Mmc1_3029
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; response regulator receiver; KEGG: lic:LIC20094 adenylate/guanylate cyclase.
 
    0.488
Mmc1_0811
Hypothetical protein; KEGG: tcr:504039.180 mucin-associated surface protein (MASP) Pfam: Mucin PROSITE: ALA_RICH GLU_RICH.
 
     0.487
Mmc1_1821
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase, HAMP region domain protein; KEGG: hch:HCH_04487 adenylate cyclase, family 3.
  
     0.437
Mmc1_2545
PFAM: Hemolysin-type calcium-binding region; KEGG: mag:amb1268 large exoprotein.
  
     0.403
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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