STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_1785PFAM: protein of unknown function DUF111; KEGG: gme:Gmet_0194 hypothetical protein; Belongs to the LarC family. (398 aa)    
Predicted Functional Partners:
Mmc1_3710
KEGG: gsu:GSU0536 conserved hypothetical protein TIGR00268.
 
 0.989
Mmc1_0162
KEGG: gme:Gmet_0193 hypothetical protein.
 
  
 0.917
Mmc1_1784
Hypothetical protein.
       0.757
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
 
      0.635
Mmc1_1783
Hypothetical protein; KEGG: bpe:BP1247 translation initiation factor IF-2.
       0.626
Mmc1_3140
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: rpc:RPC_1959 cobalamin (vitamin B12) biosynthesis CbiM protein.
  
    0.562
Mmc1_1786
PFAM: NUDIX hydrolase; KEGG: plt:Plut_0707 NUDIX/MutT family protein.
       0.494
Mmc1_0407
PFAM: aldo/keto reductase; KEGG: gvi:gll3752 probable oxidoreductase.
 
    0.490
Mmc1_2108
PFAM: protein of unknown function DUF362; KEGG: sat:SYN_02059 hypothetical cytosolic protein.
 
     0.443
Mmc1_3630
NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
   
    0.416
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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