STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_2139TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: wsu:WS1863 C4-dicarboxylate-binding periplasmic protein precursor. (341 aa)    
Predicted Functional Partners:
Mmc1_2138
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: wsu:WS1864 small integral C4-dicarboxylate membrane transport protein,putative.
 
  
 0.954
Mmc1_2137
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pae:PA5169 probable C4-dicarboxylate transporter.
  
 0.951
Mmc1_2647
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; PFAM: Extracellular ligand-binding receptor; KEGG: rpb:RPB_2081 twin-arginine translocation pathway signal; TC 3.A.1.4.-.
 
    
 0.894
Mmc1_3664
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bcl:ABC4079 C4-dicarboxylate transport system substrate-binding protein.
  
     0.763
Mmc1_1613
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ppr:PBPRA1404 hypothetical permease component of C4 dicarboxylatetransporter.
   
 0.520
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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