STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_2253PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mag:amb0971 TPR repeat. (219 aa)    
Predicted Functional Partners:
Mmc1_2255
PFAM: protein of unknown function DUF81; KEGG: mag:amb0969 trypsin-like serine protease.
 
     0.817
Mmc1_2254
KEGG: mag:amb0970 hypothetical protein.
       0.750
Mmc1_2256
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mag:amb0967 predicted Co/Zn/Cd cation transporters; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
     0.744
Mmc1_2252
PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ddi:DDB0216612 hypothetical protein.
 
 
0.705
Mmc1_2985
PFAM: sulfotransferase; TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpc:RPC_3120 TPR repeat.
 
 
 0.685
Mmc1_2269
PFAM: major facilitator superfamily MFS_1; KEGG: mag:amb0961 permease of the major facilitator superfamily.
  
     0.684
Mmc1_0564
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bxe:Bxe_A0190 TPR repeat protein.
 
 
 0.653
Mmc1_2550
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_0301 TPR repeat.
 
     0.624
Mmc1_2250
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mag:amb1007 predicted Co/Zn/Cd cation transporters; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
     0.623
Mmc1_3303
Tetratricopeptide domain protein; SMART: RNA-processing protein, HAT helix repeating-containing protein; Tetratricopeptide domain protein; KEGG: pgi:PG1014 TPR domain protein.
 
     0.612
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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