STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_2527PFAM: Di-haem cytochrome c peroxidase; KEGG: rru:Rru_A1789 cytochrome-c peroxidase. (359 aa)    
Predicted Functional Partners:
Mmc1_2526
PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: cac:CAC2534 HD_GYP hydrolase domain fused to HD hydrolase domain.
       0.449
Mmc1_2528
PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sde:Sde_2179 flagellar basal-body rod protein FlgC.
       0.443
Mmc1_0026
KEGG: tcx:Tcr_0501 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
   
  
 0.427
Mmc1_0146
PFAM: protein of unknown function DUF344; KEGG: ana:alr2191 hypothetical protein.
   
    0.416
Mmc1_3368
PFAM: protein of unknown function DUF344; KEGG: tdn:Tmden_1884 protein of unknown function DUF344.
   
    0.416
tolB
TolB, N-terminal domain protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.403
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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