STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_3298PFAM: protein of unknown function UPF0102; KEGG: sth:STH1475 predicted endonuclease; Belongs to the UPF0102 family. (124 aa)    
Predicted Functional Partners:
Mmc1_0830
Mg chelatase, subunit ChlI; KEGG: gsu:GSU0489 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; SMART: AAA ATPase.
 
  
 0.733
Mmc1_1401
KEGG: dar:Daro_0617 phosphoribosyltransferase.
 
    0.676
Mmc1_3297
PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: mag:amb4504 predicted periplasmic or secreted lipoprotein.
     
 0.616
Mmc1_3299
Transcriptional regulator, Fis family; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ava:Ava_1987 protein of unknown function UPF0011.
       0.609
Mmc1_0408
KEGG: noc:Noc_2021 PAS sensor diguanylate cyclase/phophodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
   
    0.514
Mmc1_1795
KEGG: mfa:Mfla_0802 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
   
    0.514
Mmc1_2380
KEGG: tbd:Tbd_1456 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
   
    0.514
Mmc1_2528
PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sde:Sde_2179 flagellar basal-body rod protein FlgC.
   
    0.512
Mmc1_0403
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: tdn:Tmden_0909 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains).
   
    0.503
Mmc1_0887
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: ppu:PP0672 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
   
    0.503
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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