A0A316UY53 protein (Jaminaea rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A316UY53

Signal recognition particle, SRP19 subunit. (323 aa)

Predicted Functional Partners:

A0A316ULW2

0.998

A0A316USF7

0.998

A0A316UX94

0.998

A0A316UHE0

0.994

A0A316V0T8

0.946

A0A316UW79

0.918

A0A316UYU2

0.914

A0A316UZN9

0.910

A0A316UHL4

0.909

A0A316UJ66

0.903

Your Current Organism:

Jaminaea rosea

NCBI taxonomy Id: 1569628
Other names: CBS 14051, J. rosea, Jaminaea sp. MCA 5214, Jaminaea sp. MCA5214, MCA 5214

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A316UHE0	A0A316UHL4	Uncharacterized protein.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.854
A0A316UHE0	A0A316UJ66	Uncharacterized protein.	60S ribosomal protein L27.	0.882
A0A316UHE0	A0A316ULW2	Uncharacterized protein.	Signal recognition particle, SRP9/SRP14 subunit.	0.998
A0A316UHE0	A0A316USF7	Uncharacterized protein.	SRP54-domain-containing protein.	0.994
A0A316UHE0	A0A316UW79	Uncharacterized protein.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.865
A0A316UHE0	A0A316UX94	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A316UHE0	A0A316UY53	Uncharacterized protein.	Signal recognition particle, SRP19 subunit.	0.994
A0A316UHE0	A0A316UYU2	Uncharacterized protein.	Ribosomal_L19e domain-containing protein.	0.879
A0A316UHE0	A0A316UZN9	Uncharacterized protein.	Ribosomal_L14e domain-containing protein.	0.907
A0A316UHE0	A0A316V0T8	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.889
A0A316UHL4	A0A316UHE0	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	Uncharacterized protein.	0.854
A0A316UHL4	A0A316UJ66	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	60S ribosomal protein L27.	0.999
A0A316UHL4	A0A316ULW2	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	Signal recognition particle, SRP9/SRP14 subunit.	0.890
A0A316UHL4	A0A316USF7	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	SRP54-domain-containing protein.	0.903
A0A316UHL4	A0A316UW79	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.999
A0A316UHL4	A0A316UX94	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	Uncharacterized protein.	0.896
A0A316UHL4	A0A316UY53	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	Signal recognition particle, SRP19 subunit.	0.909
A0A316UHL4	A0A316UYU2	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	Ribosomal_L19e domain-containing protein.	0.999
A0A316UHL4	A0A316UZN9	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	Ribosomal_L14e domain-containing protein.	0.999
A0A316UHL4	A0A316V0T8	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	P-loop containing nucleoside triphosphate hydrolase protein.	0.732