STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB79826.1Enterochelin esterase. (376 aa)    
Predicted Functional Partners:
lysS
lysyl-tRNA synthetase, class II; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
     0.940
SDB79957.1
Hypothetical protein.
    
   0.831
SDB79827.1
Membrane proteinase PrsW, cleaves anti-sigma factor RsiW, M82 family.
       0.536
SDB89990.1
PTS system IIA component, Glc family /PTS system IIB component, Glc family /PTS system IIC component, Glc family.
  
   
 0.510
SDC07376.1
PTS system IIA component, Glc family /PTS system IIB component, Glc family /PTS system IIC component, Glc family.
  
   
 0.503
SDB92926.1
Gluconate 2-dehydrogenase subunit 3.
  
  
  0.455
SDB80362.1
Aromatic acid exporter family member 1.
  
     0.424
SDB85240.1
CHAD domain-containing protein.
  
     0.416
SDB81345.1
6-phospho-beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
     
 0.404
SDB89907.1
4-amino-4-deoxy-L-arabinose transferase.
 
     0.402
Your Current Organism:
Raineyella antarctica
NCBI taxonomy Id: 1577474
Other names: ATCC TSD-18, DSM 100494, JCM 30886, Propionibacteriaceae bacterium 10J, Propionibacteriaceae bacterium LZ-22, R. antarctica, Raineyella antarctica Pikuta et al. 2016, strain LZ-22
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