STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaAKEGG: csc:Csac_0876 L-rhamnose isomerase; PFAM: Rhamnose isomerase; Belongs to the rhamnose isomerase family. (416 aa)    
Predicted Functional Partners:
ADY14039.1
Rhamnulokinase; KEGG: hor:Hore_09600 rhamnulokinase; PFAM: Carbohydrate kinase, FGGY, N-terminal.
 
 0.998
ADY14047.1
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
 
 
 0.988
ADY14053.1
PFAM: Class II aldolase/adducin, N-terminal; KEGG: sta:STHERM_c08370 short chain dehydrogenase.
 
   
 0.858
ADY14052.1
PFAM: Bile acid:sodium symporter; KEGG: gka:GK1988 sodium dependent transporter.
     
 0.780
xylB
KEGG: xylulokinase; TIGRFAM: Xylulokinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal.
  
  
 0.600
ADY13725.1
PFAM: Carbohydrate kinase, FGGY, N-terminal; KEGG: cce:Ccel_3468 carbohydrate kinase FGGY.
  
  
 0.600
ADY13862.1
Xylulokinase; KEGG: pjd:Pjdr2_1888 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal.
  
  
 0.600
ADY14239.1
Xylulokinase; KEGG: kol:Kole_0162 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; Belongs to the FGGY kinase family.
  
  
 0.600
ADY14303.1
PFAM: Carbohydrate kinase, FGGY, N-terminal; KEGG: aac:Aaci_0788 carbohydrate kinase, FGGY-like protein.
  
  
 0.600
ADY14055.1
Transcriptional regulator, AraC family; KEGG: rba:RB680 L-rhamnose operon transcriptional activator; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.
  
  
 0.568
Your Current Organism:
Sphaerochaeta globosa
NCBI taxonomy Id: 158189
Other names: S. globosa str. Buddy, Sphaerochaeta globosa str. Buddy, Sphaerochaeta sp. Buddy, Spirochaeta sp. Buddy
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