STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daro_0070Uncharacterized P-loop ATPase protein UPF0042; Displays ATPase and GTPase activities. (285 aa)    
Predicted Functional Partners:
ubiX
Phenylacrylic acid decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
       0.828
Daro_0068
Heptaprenyl diphosphate synthase component I.
       0.825
Daro_0069
Conserved hypothetical protein.
       0.825
Daro_0180
RNAse G.
 
 
 
 0.819
Daro_0066
Peptidase S16, lon N-terminal.
       0.818
rne
RNAse E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.
   
 
 0.788
Daro_1083
PTS IIA-like nitrogen-regulatory protein PtsN.
  
  
 0.658
Daro_4147
PTS IIA-like nitrogen-regulatory protein PtsN.
  
  
 0.658
Daro_0071
Peptidase M20D, amidohydrolase.
       0.579
Daro_4148
SSU ribosomal protein S30P / sigma 54 modulation protein.
 
  
 0.562
Your Current Organism:
Dechloromonas aromatica
NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB
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