STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daro_0086hydroxymethylglutaryl-CoA lyase. (301 aa)    
Predicted Functional Partners:
Daro_0090
Enoyl-CoA hydratase/isomerase.
 
 0.969
Daro_1021
butyryl-CoA:acetate CoA transferase; CoA transferase having broad substrate specificity for short- chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons. Belongs to the 3-oxoacid CoA-transferase family.
 
 
 0.969
Daro_2840
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
 
 0.951
Daro_0098
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.939
Daro_0177
Acetoacetyl-CoA synthase.
 
 
 0.931
Daro_0375
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.928
Daro_1545
3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.928
Daro_1550
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.928
Daro_2352
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.928
Daro_3022
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.928
Your Current Organism:
Dechloromonas aromatica
NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB
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