Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Daro_0086 | Daro_0090 | hydroxymethylglutaryl-CoA lyase. | Enoyl-CoA hydratase/isomerase. | 0.969 |
Daro_0086 | Daro_0098 | hydroxymethylglutaryl-CoA lyase. | Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.939 |
Daro_0086 | Daro_0177 | hydroxymethylglutaryl-CoA lyase. | Acetoacetyl-CoA synthase. | 0.931 |
Daro_0086 | Daro_0375 | hydroxymethylglutaryl-CoA lyase. | Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.928 |
Daro_0086 | Daro_1021 | hydroxymethylglutaryl-CoA lyase. | butyryl-CoA:acetate CoA transferase; CoA transferase having broad substrate specificity for short- chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons. Belongs to the 3-oxoacid CoA-transferase family. | 0.969 |
Daro_0086 | Daro_1545 | hydroxymethylglutaryl-CoA lyase. | 3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.928 |
Daro_0086 | Daro_1550 | hydroxymethylglutaryl-CoA lyase. | Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.928 |
Daro_0086 | Daro_2352 | hydroxymethylglutaryl-CoA lyase. | Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.928 |
Daro_0086 | Daro_2840 | hydroxymethylglutaryl-CoA lyase. | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | 0.951 |
Daro_0086 | Daro_3022 | hydroxymethylglutaryl-CoA lyase. | Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.928 |
Daro_0090 | Daro_0086 | Enoyl-CoA hydratase/isomerase. | hydroxymethylglutaryl-CoA lyase. | 0.969 |
Daro_0090 | Daro_0098 | Enoyl-CoA hydratase/isomerase. | Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.767 |
Daro_0090 | Daro_0375 | Enoyl-CoA hydratase/isomerase. | Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.647 |
Daro_0090 | Daro_1021 | Enoyl-CoA hydratase/isomerase. | butyryl-CoA:acetate CoA transferase; CoA transferase having broad substrate specificity for short- chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons. Belongs to the 3-oxoacid CoA-transferase family. | 0.550 |
Daro_0090 | Daro_1545 | Enoyl-CoA hydratase/isomerase. | 3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.647 |
Daro_0090 | Daro_1550 | Enoyl-CoA hydratase/isomerase. | Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.647 |
Daro_0090 | Daro_2352 | Enoyl-CoA hydratase/isomerase. | Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.647 |
Daro_0090 | Daro_3022 | Enoyl-CoA hydratase/isomerase. | Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.647 |
Daro_0098 | Daro_0086 | Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | hydroxymethylglutaryl-CoA lyase. | 0.939 |
Daro_0098 | Daro_0090 | Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | Enoyl-CoA hydratase/isomerase. | 0.767 |
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