Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Daro_0074 | Daro_0075 | Daro_0074 | Daro_0075 | Allophanate hydrolase subunit 2. | Amidase. | 0.999 |
Daro_0074 | Daro_2468 | Daro_0074 | Daro_2468 | Allophanate hydrolase subunit 2. | Arginase; Belongs to the arginase family. | 0.921 |
Daro_0074 | Daro_3978 | Daro_0074 | Daro_3978 | Allophanate hydrolase subunit 2. | Hydrogenase accessory protein HypB. | 0.413 |
Daro_0074 | ureA | Daro_0074 | Daro_1429 | Allophanate hydrolase subunit 2. | Urease, gamma subunit region; Belongs to the urease gamma subunit family. | 0.910 |
Daro_0074 | ureB | Daro_0074 | Daro_1428 | Allophanate hydrolase subunit 2. | Urease, beta subunit; Belongs to the urease beta subunit family. | 0.936 |
Daro_0074 | ureC | Daro_0074 | Daro_1427 | Allophanate hydrolase subunit 2. | Urease, Metallo peptidase, MEROPS family M38; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | 0.941 |
Daro_0074 | ureD | Daro_0074 | Daro_1430 | Allophanate hydrolase subunit 2. | Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.444 |
Daro_0074 | ureE | Daro_0074 | Daro_1426 | Allophanate hydrolase subunit 2. | UreE urease accessory, N-terminal:UreE urease accessory, C-terminal; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.447 |
Daro_0074 | ureF | Daro_0074 | Daro_1425 | Allophanate hydrolase subunit 2. | Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.429 |
Daro_0074 | ureG | Daro_0074 | Daro_1424 | Allophanate hydrolase subunit 2. | Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.413 |
Daro_0075 | Daro_0074 | Daro_0075 | Daro_0074 | Amidase. | Allophanate hydrolase subunit 2. | 0.999 |
Daro_0075 | ureA | Daro_0075 | Daro_1429 | Amidase. | Urease, gamma subunit region; Belongs to the urease gamma subunit family. | 0.900 |
Daro_0075 | ureB | Daro_0075 | Daro_1428 | Amidase. | Urease, beta subunit; Belongs to the urease beta subunit family. | 0.900 |
Daro_0075 | ureC | Daro_0075 | Daro_1427 | Amidase. | Urease, Metallo peptidase, MEROPS family M38; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | 0.900 |
Daro_2468 | Daro_0074 | Daro_2468 | Daro_0074 | Arginase; Belongs to the arginase family. | Allophanate hydrolase subunit 2. | 0.921 |
Daro_2468 | ureA | Daro_2468 | Daro_1429 | Arginase; Belongs to the arginase family. | Urease, gamma subunit region; Belongs to the urease gamma subunit family. | 0.910 |
Daro_2468 | ureB | Daro_2468 | Daro_1428 | Arginase; Belongs to the arginase family. | Urease, beta subunit; Belongs to the urease beta subunit family. | 0.908 |
Daro_2468 | ureC | Daro_2468 | Daro_1427 | Arginase; Belongs to the arginase family. | Urease, Metallo peptidase, MEROPS family M38; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | 0.911 |
Daro_3978 | Daro_0074 | Daro_3978 | Daro_0074 | Hydrogenase accessory protein HypB. | Allophanate hydrolase subunit 2. | 0.413 |
Daro_3978 | ureA | Daro_3978 | Daro_1429 | Hydrogenase accessory protein HypB. | Urease, gamma subunit region; Belongs to the urease gamma subunit family. | 0.699 |
page 1 of 5