STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daro_2277protein-S-isoprenylcysteine methyltransferase. (216 aa)    
Predicted Functional Partners:
Daro_2276
Conserved hypothetical protein.
 
    0.952
Daro_2275
YHS protein.
 
     0.759
Daro_2274
Metal-dependent phosphohydrolase, HD subdomain.
       0.688
Daro_2258
Heavy metal sensor kinase; Member of a two-component regulatory system.
 
     0.567
Daro_2267
ATPase, E1-E2 type:Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase.
     0.558
Daro_2473
Heavy metal sensor kinase; Member of a two-component regulatory system.
  
     0.449
Daro_2260
Cytochrome c family protein.
 
     0.416
rpsM
SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.
   
    0.400
Your Current Organism:
Dechloromonas aromatica
NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB
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