Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Daro_3859 | Daro_3862 | Daro_3859 | Daro_3862 | Probable cytochrome c5. | Sulfur carrier protein ThiS. | 0.603 |
Daro_3859 | Daro_3863 | Daro_3859 | Daro_3863 | Probable cytochrome c5. | Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.595 |
Daro_3859 | Daro_3864 | Daro_3859 | Daro_3864 | Probable cytochrome c5. | Twin-arginine translocation pathway signal. | 0.603 |
Daro_3859 | Daro_3865 | Daro_3859 | Daro_3865 | Probable cytochrome c5. | Sporulation related protein. | 0.595 |
Daro_3859 | Daro_3867 | Daro_3859 | Daro_3867 | Probable cytochrome c5. | Conserved hypothetical protein. | 0.524 |
Daro_3859 | Daro_3868 | Daro_3859 | Daro_3868 | Probable cytochrome c5. | Diguanylate cyclase. | 0.524 |
Daro_3859 | argS | Daro_3859 | Daro_3866 | Probable cytochrome c5. | arginyl-tRNA synthetase. | 0.595 |
Daro_3859 | thiG | Daro_3859 | Daro_3861 | Probable cytochrome c5. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.615 |
Daro_3859 | trmB | Daro_3859 | Daro_3860 | Probable cytochrome c5. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.608 |
Daro_3862 | Daro_3859 | Daro_3862 | Daro_3859 | Sulfur carrier protein ThiS. | Probable cytochrome c5. | 0.603 |
Daro_3862 | Daro_3863 | Daro_3862 | Daro_3863 | Sulfur carrier protein ThiS. | Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.777 |
Daro_3862 | Daro_3864 | Daro_3862 | Daro_3864 | Sulfur carrier protein ThiS. | Twin-arginine translocation pathway signal. | 0.773 |
Daro_3862 | Daro_3865 | Daro_3862 | Daro_3865 | Sulfur carrier protein ThiS. | Sporulation related protein. | 0.806 |
Daro_3862 | Daro_3867 | Daro_3862 | Daro_3867 | Sulfur carrier protein ThiS. | Conserved hypothetical protein. | 0.679 |
Daro_3862 | Daro_3868 | Daro_3862 | Daro_3868 | Sulfur carrier protein ThiS. | Diguanylate cyclase. | 0.674 |
Daro_3862 | argS | Daro_3862 | Daro_3866 | Sulfur carrier protein ThiS. | arginyl-tRNA synthetase. | 0.784 |
Daro_3862 | thiG | Daro_3862 | Daro_3861 | Sulfur carrier protein ThiS. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.999 |
Daro_3862 | trmB | Daro_3862 | Daro_3860 | Sulfur carrier protein ThiS. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.786 |
Daro_3863 | Daro_3859 | Daro_3863 | Daro_3859 | Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Probable cytochrome c5. | 0.595 |
Daro_3863 | Daro_3862 | Daro_3863 | Daro_3862 | Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Sulfur carrier protein ThiS. | 0.777 |
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