STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPF_13482-hydroxyglutaryl-CoA dehydratase. (381 aa)    
Predicted Functional Partners:
DPF_1349
3-hydroxyacyl-ACP dehydratase.
 0.999
DPF_0083
Aldehyde oxidoreductase.
    
  0.844
DPF_1920
SirA family protein; Belongs to the sulfur carrier protein TusA family.
 
    0.778
DPF_1352
Group 1 glycosyl transferase.
 
     0.585
DPF_1350
3-hydroxyacyl-ACP dehydratase.
 
    
0.517
DPF_0356
Preprotein translocase subunit TatB; Belongs to the sulfur carrier protein TusA family.
 
    0.514
DPF_1351
ATPase P.
 
     0.448
DPF_1345
ABC transporter substrate-binding protein.
 
     0.430
DPF_2006
Translation elongation factor.
  
     0.423
Your Current Organism:
Desulfoplanes formicivorans
NCBI taxonomy Id: 1592317
Other names: D. formicivorans, DSM 28890, Desulfomicrobiaceae bacterium Pf12B, Desulfoplanes formicivorans Watanabe et al. 2015, NBRC 110391, strain Pf12B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.