STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPF_1692Hypothetical protein. (608 aa)    
Predicted Functional Partners:
DPF_2404
Hypothetical protein.
  
 0.941
DPF_1689
Type II/III secretion system protein.
  
 
 0.705
DPF_2405
Hypothetical protein.
  
 
 0.620
DPF_2406
Hypothetical protein.
  
 
 0.606
DPF_1691
Hypothetical protein.
       0.597
DPF_1686
General secretion pathway protein GspF.
   
 
 0.564
DPF_2407
Hypothetical protein.
  
 
 0.554
DPF_1690
Hypothetical protein.
       0.539
DPF_1687
General secretion pathway protein GspE.
   
 
 0.529
DPF_1504
Peptidoglycan-binding protein.
    
   0.522
Your Current Organism:
Desulfoplanes formicivorans
NCBI taxonomy Id: 1592317
Other names: D. formicivorans, DSM 28890, Desulfomicrobiaceae bacterium Pf12B, Desulfoplanes formicivorans Watanabe et al. 2015, NBRC 110391, strain Pf12B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.