STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_2051Conjugal transfer protein; Similar to GI|1572553 (percent identity: 65 %/query alignment coverage: 101.7 %/subject alignment coverage: 98.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder. (296 aa)    
Predicted Functional Partners:
XF_2049
Conjugal transfer protein; Similar to GI|1572555 (percent identity: 53 %/query alignment coverage: 103.4 %/subject alignment coverage: 101.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
 0.999
XF_2052
Conjugal transfer protein; Similar to GI|348627 (percent identity: 49 %/query alignment coverage: 92.9 %/subject alignment coverage: 87.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.994
XF_2046
Conjugal transfer protein; Similar to GI|1572558 (percent identity: 45 %/query alignment coverage: 122.0 %/subject alignment coverage: 99.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.979
XF_2054
Conjugal transfer protein; Similar to GI|540915 (percent identity: 68 %/query alignment coverage: 97.2 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
  
 0.979
XF_2056
Conjugal transfer protein; Similar to GI|348623 (percent identity: 69 %/query alignment coverage: 95.9 %/subject alignment coverage: 29.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -15.
 
  
 0.976
XF_2055
Conjugal transfer protein; Similar to GI|1572549 (percent identity: 52 %/query alignment coverage: 84.0 %/subject alignment coverage: 78.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
    
 0.933
XF_2058
Conjugal transfer protein; Similar to SP|Q05119 (percent identity: 59 %/query alignment coverage: 100.0 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -75.
 
   
 0.799
XF_2061
DNA primase; Similar to SP|P27190 (percent identity: 44 %/query alignment coverage: 109.8 %/subject alignment coverage: 104.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.799
XF_2050
Conjugal transfer protein; Similar to GI|348629 (percent identity: 45 %/query alignment coverage: 101.9 %/subject alignment coverage: 100.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
       0.790
XF_2025
DNA primase; Similar to SP|P27189 (percent identity: 56 %/query alignment coverage: 116.3 %/subject alignment coverage: 39.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder.
 
     0.733
Your Current Organism:
Xylella fastidiosa
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.