STRINGSTRING
XF_2051 protein (Xylella fastidiosa 9a5c) - STRING interaction network
"XF_2051" - Conjugal transfer protein in Xylella fastidiosa 9a5c
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XF_2051Conjugal transfer protein; Similar to GI|1572553 (percent identity- 65 %/query alignment coverage- 101.7 %/subject alignment coverage- 98.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder (296 aa)    
Predicted Functional Partners:
XF_2049
Conjugal transfer protein; Similar to GI|1572555 (percent identity- 53 %/query alignment coverage- 103.4 %/subject alignment coverage- 101.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder (466 aa)
 
 
 
  0.975
XF_2052
Conjugal transfer protein; Similar to GI|348627 (percent identity- 49 %/query alignment coverage- 92.9 %/subject alignment coverage- 87.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder (238 aa)
 
     
  0.958
XF_a0040
Conjugal transfer protein; Identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder (469 aa)
 
 
 
  0.850
XF_2050
Conjugal transfer protein; Similar to GI|348629 (percent identity- 45 %/query alignment coverage- 101.9 %/subject alignment coverage- 100.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder (158 aa)
              0.850
XF_2061
DNA primase; Similar to SP|P27190 (percent identity- 44 %/query alignment coverage- 109.8 %/subject alignment coverage- 104.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder (1371 aa)
 
          0.817
XF_2054
Conjugal transfer protein; Similar to GI|540915 (percent identity- 68 %/query alignment coverage- 97.2 %/subject alignment coverage- 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder (106 aa)
 
     
  0.804
XF_2055
Conjugal transfer protein; Similar to GI|1572549 (percent identity- 52 %/query alignment coverage- 84.0 %/subject alignment coverage- 78.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder (144 aa)
 
     
  0.801
XF_2046
Conjugal transfer protein; Identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder (464 aa)
 
     
  0.798
AAF84848.1
Similar to GI|1572558 (percent identity- 45 %/query alignment coverage- 122.0 %/subject alignment coverage- 99.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder (464 aa)
 
     
  0.798
XF_a0043
Conjugal transfer protein; Identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder (238 aa)
 
     
  0.790
Your Current Organism:
Xylella fastidiosa 9a5c
NCBI taxonomy Id: 160492
Other names: X. fastidiosa 9a5c, Xylella fastidiosa 9a5c
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