STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC65548.1DNA-binding transcriptional regulator GbsR, MarR family; Belongs to the GbsR family. (187 aa)    
Predicted Functional Partners:
SDC28468.1
Scaffold protein Nfu/NifU N terminal.
  
     0.740
SDC40126.1
Protein of unknown function.
  
     0.738
SDB98938.1
Hypothetical protein.
  
     0.709
SDB87198.1
Putative cell-wall binding lipoprotein.
  
     0.613
SDC65590.1
Uncharacterized protein YhaN.
       0.588
SDC65628.1
DNA repair exonuclease SbcCD nuclease subunit.
       0.588
SDC17594.1
Ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit.
  
     0.515
SDC51036.1
Hypothetical protein.
  
     0.511
SDC29632.1
Hypothetical protein.
  
     0.477
SDB83227.1
Protein of unknown function.
  
     0.464
Your Current Organism:
Pelagirhabdus alkalitolerans
NCBI taxonomy Id: 1612202
Other names: Amphibacillus sp. S5, CGMCC 1.15177, KCTC 33632, P. alkalitolerans, Pelagirhabdus alkalitolerans Sultanpuram et al. 2016, strain S5
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