STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT70844.1Rhomboid family protein. (224 aa)    
Predicted Functional Partners:
GAT70518.1
Cell wall hydrolase.
  
   0.864
GAT69723.1
Translocase.
   
 
 0.713
tatA
Sec-independent translocation protein MttA/Hcf106; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.711
GAT64729.1
Band 7 protein.
   
 0.592
GAT64730.1
Membrane protease subunits stomatin/prohibitin.
   
 0.592
GAT65091.1
Membrane protein.
   
 0.592
GAT66206.1
Membrane protein.
   
 0.592
GAT66808.1
Band 7 protein.
   
 0.592
GAT67994.1
SPFH domain-containing protein/band 7 family protein.
   
 0.592
GAT70126.1
Stomatin/prohibitin-family membrane protease subunit YbbK.
   
 0.592
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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