node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KKQ41164.1 | KKQ41245.1 | US58_C0004G0001 | US58_C0003G0028 | DNA-directed RNA polymerase subunit alpha. | RNA binding S1 domain protein. | 0.999 |
KKQ41164.1 | gltX | US58_C0004G0001 | US58_C0004G0022 | DNA-directed RNA polymerase subunit alpha. | Glutamate-tRNA ligase GltX; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). | 0.565 |
KKQ41164.1 | rplE | US58_C0004G0001 | US58_C0036G0014 | DNA-directed RNA polymerase subunit alpha. | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.999 |
KKQ41164.1 | rplM | US58_C0004G0001 | US58_C0004G0003 | DNA-directed RNA polymerase subunit alpha. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
KKQ41164.1 | rplQ | US58_C0004G0001 | US58_C0004G0002 | DNA-directed RNA polymerase subunit alpha. | 50S ribosomal protein L17. | 0.999 |
KKQ41164.1 | rplT | US58_C0004G0001 | US58_C0001G0021 | DNA-directed RNA polymerase subunit alpha. | 50S ribosomal subunit protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.981 |
KKQ41164.1 | rpmI | US58_C0004G0001 | US58_C0001G0022 | DNA-directed RNA polymerase subunit alpha. | 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.972 |
KKQ41164.1 | rpsI | US58_C0004G0001 | US58_C0004G0004 | DNA-directed RNA polymerase subunit alpha. | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
KKQ41245.1 | KKQ41164.1 | US58_C0003G0028 | US58_C0004G0001 | RNA binding S1 domain protein. | DNA-directed RNA polymerase subunit alpha. | 0.999 |
KKQ41245.1 | gltX | US58_C0003G0028 | US58_C0004G0022 | RNA binding S1 domain protein. | Glutamate-tRNA ligase GltX; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). | 0.540 |
KKQ41245.1 | rplE | US58_C0003G0028 | US58_C0036G0014 | RNA binding S1 domain protein. | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.999 |
KKQ41245.1 | rplM | US58_C0003G0028 | US58_C0004G0003 | RNA binding S1 domain protein. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
KKQ41245.1 | rplQ | US58_C0003G0028 | US58_C0004G0002 | RNA binding S1 domain protein. | 50S ribosomal protein L17. | 0.999 |
KKQ41245.1 | rplT | US58_C0003G0028 | US58_C0001G0021 | RNA binding S1 domain protein. | 50S ribosomal subunit protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
KKQ41245.1 | rpmI | US58_C0003G0028 | US58_C0001G0022 | RNA binding S1 domain protein. | 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.940 |
KKQ41245.1 | rpsI | US58_C0003G0028 | US58_C0004G0004 | RNA binding S1 domain protein. | Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
KKQ41245.1 | smpB | US58_C0003G0028 | US58_C0001G0024 | RNA binding S1 domain protein. | SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.420 |
def | rplE | US58_C0004G0014 | US58_C0036G0014 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.999 |
def | rplM | US58_C0004G0014 | US58_C0004G0003 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
def | rplQ | US58_C0004G0014 | US58_C0004G0002 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L17. | 0.999 |