STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yugGUncharacterized HTH-type transcriptional regulator YugG. (164 aa)    
Predicted Functional Partners:
yugH
Putative aminotransferase YugH; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.952
ydeL
Uncharacterized HTH-type transcriptional regulator YdeL.
     
 0.493
braB
Branched-chain amino acid transport system carrier protein BraB.
  
  
 0.483
CEM62064.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.474
nifJ
Pyruvate-flavodoxin oxidoreductase.
     
 0.467
actP
Copper-transporting ATPase 2.
     
 0.466
CEM61784.1
Diguanylate cyclase (GGDEF) domain protein (fragment).
     
 0.444
CEM61610.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.414
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.