STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapE_1Succinyl-diaminopimelate desuccinylase. (355 aa)    
Predicted Functional Partners:
argD_2
Acetylornithine aminotransferase.
 
 
 0.976
argG
Argininosuccinate synthase.
 
 0.974
argC
N-acetyl-gamma-glutamyl-phosphate reductase.
 
 0.926
argF
N-acetylornithine carbamoyltransferase.
 
 
 0.920
SCI57388.1
Uncharacterised protein.
 
 
 0.911
argD_1
Acetylornithine/acetyl-lysine aminotransferase.
 
 
 0.890
argB
Acetylglutamate kinase.
 
 
 0.878
glmS
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing].
   
 0.878
argH
Argininosuccinate lyase.
 
 
 0.856
SCH48059.1
Long-chain-fatty-acid--CoA ligase FadD15.
       0.690
Your Current Organism:
uncultured Bacteroides sp.
NCBI taxonomy Id: 162156
Other names: u. Bacteroides sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.