STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmE250S ribosomal protein L31 type B. (83 aa)    
Predicted Functional Partners:
rpmB
50S ribosomal protein L28.
 
 
 0.992
rpsO
BS18.
  
 
 0.990
rpsP
BS17.
  
 
 0.989
rplS
50S ribosomal protein L19.
  
 
 0.988
rpsT
30S ribosomal protein S20.
  
 
 0.988
rpsR
30S ribosomal protein S18.
 
 
 0.988
rplU
50S ribosomal protein L21.
  
 
 0.988
rplM
RRP-L13.
  
 
 0.987
rpsI
30S ribosomal protein S9.
  
 
 0.987
rpmF
BL37.
  
 
 0.987
Your Current Organism:
uncultured Bacteroides sp.
NCBI taxonomy Id: 162156
Other names: u. Bacteroides sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.