STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJS41102.1Protein nirG; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)    
Predicted Functional Partners:
KJS41096.1
Protein nirH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.999
KJS41097.1
Protein nirL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
KJS41095.1
Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.988
KJS41100.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.987
KJS41099.1
Protein nirF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.976
KJS41098.1
AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.942
KJS39873.1
Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.891
KJS38962.1
Nitric oxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.839
KJS38961.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.770
pqqE
Pyrroloquinoline quinone biosynthesis protein PqqE; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ).
  
 
 0.768
Your Current Organism:
Rhodospirillaceae bacterium BRHc57
NCBI taxonomy Id: 1629718
Other names: R. bacterium BRH_c57, Rhodospirillaceae bacterium BRH_c57
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.