STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMV17532.1RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (186 aa)    
Predicted Functional Partners:
AMV17531.1
Hypothetical protein.
 
     0.853
AMV18001.1
FecR protein.
  
   0.785
AMV16721.1
Hypothetical protein.
  
     0.696
AMV19303.1
Hypothetical protein; Bacterial pre-peptidase C-terminal domain.
  
     0.680
AMV19304.1
Hypothetical protein.
  
     0.657
AMV17533.1
Hypothetical protein.
 
     0.626
AMV21347.1
Tetratricopeptide repeat protein.
  
     0.610
AMV18171.1
Hypothetical protein.
  
     0.583
AMV17534.1
Hypothetical protein.
 
     0.579
shc_1
Squalene--hopene cyclase.
  
     0.577
Your Current Organism:
Planctomyces sp. SHPL14
NCBI taxonomy Id: 1632864
Other names: P. sp. SH-PL14, Planctomyces sp. SH-PL14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.