STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XD76_1126Peptide deformylase. (162 aa)    
Predicted Functional Partners:
XD76_1605
Methionyl-tRNA formyltransferase.
 0.984
XD76_1689
50S ribosomal protein L22.
    
   0.981
XD76_1711
50S ribosomal protein L17.
    
   0.976
XD76_0070
50S ribosomal protein L21.
 
 
 0.968
XD76_0926
50S ribosomal protein L20.
  
 
 0.968
XD76_1003
30S ribosomal protein S6.
   
   0.967
XD76_1017
30S ribosomal protein S20.
  
 
 0.967
XD76_1089
Trigger factor.
  
 
 0.967
XD76_1198
30S ribosomal protein S21.
  
 
 0.966
XD76_1685
50S ribosomal protein L4.
  
 
   0.966
Your Current Organism:
candidate division TA06 bacterium 32111
NCBI taxonomy Id: 1635278
Other names: c. division TA06 bacterium 32_111, candidate division TA06 bacterium 32_111
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.