STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XD60_0588Histone deacetylase superfamily protein. (280 aa)    
Predicted Functional Partners:
XD60_0549
Hypothetical protein.
  
 
 0.968
XD60_0188
NAD-dependent deacetylase.
    
 0.966
XD60_1141
F0F1 ATP synthase subunit beta.
   
 0.938
XD60_0639
AAA family ATPase, CDC48 subfamily.
   
 0.808
XD60_0863
Phosphoribulokinase.
   
 0.762
XD60_0702
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
   
 0.670
XD60_1433
D-3-phosphoglycerate dehydrogenase.
   
 0.670
XD60_1488
Phosphoribulokinase/uridine kinase.
   
  0.661
XD60_0039
DNA mismatch repair protein MutS.
   
 
 0.640
XD60_0226
Histidine kinase.
     
 0.626
Your Current Organism:
Acetothermia bacterium 6432
NCBI taxonomy Id: 1635286
Other names: A. bacterium 64_32, Acetothermia bacterium 64_32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.