STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000971375_01392Unannotated protein. (337 aa)    
Predicted Functional Partners:
GCA_000971375_01359
Unannotated protein.
  
     0.631
GCA_000971375_01393
Unannotated protein.
       0.430
GCA_000971375_00193
Unannotated protein.
    
   0.424
GCA_000971375_01700
Unannotated protein.
    
   0.424
GCA_000971375_02717
Unannotated protein.
    
   0.424
GCA_000971375_00358
Unannotated protein.
   
  0.422
GCA_000971375_02321
Unannotated protein.
   
 
0.422
GCA_000971375_02322
Unannotated protein.
   
 
0.422
GCA_000971375_02347
Unannotated protein.
   
  0.422
Your Current Organism:
Lysinimicrobium aestuarii
NCBI taxonomy Id: 1638982
Other names: DSM 28144, L. aestuarii, Lysinimicrobium aestuarii Hamada et al. 2015, Lysinimicrobium sp. HI12-100, Lysinimicrobium sp. HI12-104, Lysinimicrobium sp. HI12-140, Lysinimicrobium sp. NBRC 109392, Lysinimicrobium sp. NBRC 109398, Lysinimicrobium sp. NBRC 110048, NBRC 109392, strain HI12-104
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.