STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN05216323_105425EamA domain-containing membrane protein RarD. (314 aa)    
Predicted Functional Partners:
SAMN05216323_10302
EamA-like transporter family protein.
 
     0.606
SAMN05216323_100178
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.574
SAMN05216323_105423
Benzil reductase ((S)-benzoin forming).
       0.540
SAMN05216323_105424
Uncharacterized protein.
       0.540
SAMN05216323_105426
Nitroreductase.
       0.478
SAMN05216323_10349
Outer membrane transport energization protein TonB.
  
     0.412
Your Current Organism:
Williamwhitmania taraxaci
NCBI taxonomy Id: 1640674
Other names: Bacteroidales bacterium A7P-90m, DSM 100563, JCM 30888, W. taraxaci, Williamwhitmania taraxaci Pikuta et al. 2017, bacterium A7P-90m, strain A7P-90m
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.