STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
susC19TonB-dependent receptor SusC; Mediates transport of starch oligosaccharides from the surface of the outer membrane to the periplasm for subsequent degradation. pass membrane protein Sequence=AAA95938.1; Type=Frameshift; Positions=374, 380, 714, 724, 745; Evidence=; sp|Q8A1G1|SUSC_BACTN;evalue=1e-055; PctID=35.15; score=219. (1018 aa)    
Predicted Functional Partners:
SCM55875.1
SusD family protein {ECO:0000313|EMBL:BAR48658,1}; tr|A0A0E4BCL2|A0A0E4BCL2_TANFO, tr|A0A0E4BGN6|A0A0E4BGN6_TANFO;evalue=0.0; PctID=67.59; score=710.
     0.892
SCM55871.1
Putative lipoprotein {ECO:0000313|EMBL:CEA16663,1}; tr|A0A098C2M3|A0A098C2M3_9PORP;evalue=0.0; PctID=76.89; score=759.
 
     0.826
SCM55473.1
SusD-like protein BACOVA_02651; Polysaccharide-binding protein present at the surface of the cell. Probably mediates xyloglucan-binding before xyloglucan transport in the periplasm for degradation. anchor Note=Cell outer membrane localization is predicted by analogy with the archetypal sus locus. dietary polysaccharides through glycosidases that are absent in the human genome. Xyloglucans are a ubiquitous family of highly branched plant cell wall polysaccharides present in the vegetables we consume. Enzymes involved in xyloglucan degradation mediate the conversion of otherwise indigest [...]
 
     0.765
SCM59251.1
Putative protein {ECO:0000313|EMBL:CCZ43704,1}; tr|R5RYN5|R5RYN5_9BACE;evalue=4e-133; PctID=53.12; score=481.
 
     0.734
SCM55172.1
Putative protein {ECO:0000313|EMBL:EFS30817,1}; tr|E5C6Q2|E5C6Q2_9BACE;evalue=0.0; PctID=64.94; score=682.
 
     0.732
SCM58792.1
Putative protein {ECO:0000313|EMBL:EGM99633,1}; tr|F7LFW7|F7LFW7_BACOV;evalue=0.0; PctID=75.09; score=850.
 
     0.732
SCM57910.1
RagB/SusD domain protein {ECO:0000313|EMBL:ADY53605,1}; tr|F0SA41|F0SA41_PSESL;evalue=3e-059; PctID=63.86; score=233.
 
     0.729
SCM59051.1
Putative protein {ECO:0000313|EMBL:KKB45213,1}; tr|A0A0F5IIB1|A0A0F5IIB1_9PORP, tr|K5YSH1|K5YSH1_9PORP,tr|S0GI26|S0GI26_9PORP;evalue=0.0; PctID=61.68; score=763.
  
     0.720
susD
Major starch-binding protein present at the surface of the cell. Mediates starch-binding before starch transport in the periplasm for degradation. ECO:0000269|}; Lipid-anchor that complements the natural helical structure of starch and imposes this conformation on bound maltoheptaose. Binds cyclic oligosaccharides with higher affinity than linear forms. pullulan, as well as maltohexaose and maltoheptaose. Sequence=AAB42172.1; Type=Frameshift; Positions=436, 461, 465, 467, 475, 476; Evidence=; sp|Q8A1G2|SUSD_BACTN;evalue=1e-025; PctID=36.36; score=118.
  
   
 0.712
SCM58777.1
Outer membrane protein {ECO:0000313|EMBL:EFI14658,1}; tr|D7J0Z8|D7J0Z8_9BACE;evalue=0.0; PctID=58.10; score=642.
  
     0.707
Your Current Organism:
Petrimonas mucosa
NCBI taxonomy Id: 1642646
Other names: CECT 8611, DSM 28695, P. mucosa, Petrimonas mucosa Hahnke et al. 2016, Petrimonas sp. ING2-E5A, strain ING2 E5A, strain ING2-E5A
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