Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 annotation | node2 annotation | score |
| PSM36_0009 | PSM36_0190 | This family includes several hypothetical proteins. It also contains RagB, a protein involved in signalling and SusD, an outer membrane protein involved in nutrient binding; High confidence in function and specificity. | Hypothetical protein; High confidence in function and specificity. | 0.433 |
| PSM36_0009 | PSM36_0944 | This family includes several hypothetical proteins. It also contains RagB, a protein involved in signalling and SusD, an outer membrane protein involved in nutrient binding; High confidence in function and specificity. | SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large varie [...] | 0.700 |
| PSM36_0009 | PSM36_2174 | This family includes several hypothetical proteins. It also contains RagB, a protein involved in signalling and SusD, an outer membrane protein involved in nutrient binding; High confidence in function and specificity. | Hypothetical protein. | 0.419 |
| PSM36_0009 | PSM36_2175 | This family includes several hypothetical proteins. It also contains RagB, a protein involved in signalling and SusD, an outer membrane protein involved in nutrient binding; High confidence in function and specificity. | Hypothetical protein; High confidence in function and specificity. | 0.445 |
| PSM36_0190 | PSM36_0009 | Hypothetical protein; High confidence in function and specificity. | This family includes several hypothetical proteins. It also contains RagB, a protein involved in signalling and SusD, an outer membrane protein involved in nutrient binding; High confidence in function and specificity. | 0.433 |
| PSM36_0190 | PSM36_0944 | Hypothetical protein; High confidence in function and specificity. | SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large varie [...] | 0.433 |
| PSM36_0190 | PSM36_2175 | Hypothetical protein; High confidence in function and specificity. | Hypothetical protein; High confidence in function and specificity. | 0.597 |
| PSM36_0190 | PSM36_2697 | Hypothetical protein; High confidence in function and specificity. | SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large varie [...] | 0.433 |
| PSM36_0190 | PSM36_3151 | Hypothetical protein; High confidence in function and specificity. | Heparinase II/III family protein; High confidence in function and specificity. | 0.588 |
| PSM36_0328 | PSM36_2175 | Acetyl xylan esterase; This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan; High confidence in function and specificity. | Hypothetical protein; High confidence in function and specificity. | 0.415 |
| PSM36_0328 | PSM36_2460 | Acetyl xylan esterase; This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan; High confidence in function and specificity. | Dipeptidyl aminopeptidase/acylaminoacyl peptidase; High confidence in function and specificity. | 0.604 |
| PSM36_0328 | PSM36_3151 | Acetyl xylan esterase; This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan; High confidence in function and specificity. | Heparinase II/III family protein; High confidence in function and specificity. | 0.565 |
| PSM36_0944 | PSM36_0009 | SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large varie [...] | This family includes several hypothetical proteins. It also contains RagB, a protein involved in signalling and SusD, an outer membrane protein involved in nutrient binding; High confidence in function and specificity. | 0.700 |
| PSM36_0944 | PSM36_0190 | SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large varie [...] | Hypothetical protein; High confidence in function and specificity. | 0.433 |
| PSM36_0944 | PSM36_2174 | SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large varie [...] | Hypothetical protein. | 0.590 |
| PSM36_0944 | PSM36_2175 | SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large varie [...] | Hypothetical protein; High confidence in function and specificity. | 0.415 |
| PSM36_2174 | PSM36_0009 | Hypothetical protein. | This family includes several hypothetical proteins. It also contains RagB, a protein involved in signalling and SusD, an outer membrane protein involved in nutrient binding; High confidence in function and specificity. | 0.419 |
| PSM36_2174 | PSM36_0944 | Hypothetical protein. | SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large varie [...] | 0.590 |
| PSM36_2174 | PSM36_2175 | Hypothetical protein. | Hypothetical protein; High confidence in function and specificity. | 0.460 |
| PSM36_2175 | PSM36_0009 | Hypothetical protein; High confidence in function and specificity. | This family includes several hypothetical proteins. It also contains RagB, a protein involved in signalling and SusD, an outer membrane protein involved in nutrient binding; High confidence in function and specificity. | 0.445 |
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