STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3G538_PHYRM40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (71 aa)    
Predicted Functional Partners:
H3G4Y3_PHYRM
Uncharacterized protein.
   
 0.999
H3G5A1_PHYRM
Uncharacterized protein.
   
 0.999
H3G5I3_PHYRM
40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.
   
 0.999
H3G5Z9_PHYRM
40S ribosomal protein S27.
   
 0.999
H3G699_PHYRM
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
   
 0.999
H3G6N3_PHYRM
Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.
   
 0.999
H3G808_PHYRM
Uncharacterized protein.
   
 0.999
H3G844_PHYRM
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.999
H3G850_PHYRM
S10_plectin domain-containing protein.
   
 0.999
H3G898_PHYRM
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.999
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.