STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GA55_PHYRMNEDD8-activating enzyme E1 regulatory subunit. (527 aa)    
Predicted Functional Partners:
H3GHW1_PHYRM
E2_bind domain-containing protein.
   
 0.999
H3G6E1_PHYRM
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.942
H3GWZ8_PHYRM
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.942
H3GAM0_PHYRM
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
 
  
   0.897
H3G8X4_PHYRM
Autophagy-related protein.
   
 0.869
H3G6T3_PHYRM
Molybdopterin synthase catalytic subunit; Catalytic subunit of the molybdopterin synthase complex, a complex that catalyzes the conversion of precursor Z into molybdopterin. Acts by mediating the incorporation of 2 sulfur atoms from thiocarboxylated MOCS2A into precursor Z to generate a dithiolene group.
  
 0.863
H3GID5_PHYRM
Ubiquitin-like domain-containing protein.
   
 0.863
H3GPC6_PHYRM
Autophagy-related protein 3.
    
 0.860
H3GYJ5_PHYRM
HECT domain-containing protein.
    
 0.789
H3HC07_PHYRM
HECT domain-containing protein.
    
 0.789
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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