STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GDW0_PHYRMUncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (301 aa)    
Predicted Functional Partners:
H3GFQ7_PHYRM
Ribosomal_L18e/L15P domain-containing protein.
 
 
 
  0.905
H3GV22_PHYRM
Uncharacterized protein.
   
   0.770
H3GDP2_PHYRM
Ribosomal_L14e domain-containing protein.
   
 
 0.559
H3GNV2_PHYRM
Uncharacterized protein.
   
 
 0.531
H3GXK3_PHYRM
Ribosomal_L28e domain-containing protein.
   
   0.529
H3G8S1_PHYRM
60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.
   
   0.523
H3G973_PHYRM
Ribosomal_L2_C domain-containing protein.
   
 
 0.515
H3G9F0_PHYRM
Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.
   
   0.515
H3G699_PHYRM
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
   
   0.508
H3G9T2_PHYRM
KH type-2 domain-containing protein.
   
   0.508
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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