STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GVJ5_PHYRMProtein YIPF. (266 aa)    
Predicted Functional Partners:
H3G6F0_PHYRM
Protein YIPF.
   
 
 0.949
H3HD68_PHYRM
Uncharacterized protein.
    
 
 0.898
H3GZ44_PHYRM
Golgi apparatus membrane protein TVP23 homolog.
   
 
 0.827
H3GNM2_PHYRM
Uncharacterized protein.
   
  
 0.413
H3G924_PHYRM
Glyco_transf_20 domain-containing protein.
    
 
 0.412
H3GDY3_PHYRM
Glyco_transf_20 domain-containing protein.
    
 
 0.412
H3GM47_PHYRM
Uncharacterized protein.
    
 
 0.412
H3GTK8_PHYRM
Glyco_transf_20 domain-containing protein.
    
 
 0.412
H3GW52_PHYRM
Uncharacterized protein.
    
 
 0.412
H3GW55_PHYRM
Trehalose 6-phosphate phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
    
 
 0.412
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.