STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GW53_PHYRMUncharacterized protein. (327 aa)    
Predicted Functional Partners:
H3H2W1_PHYRM
Uncharacterized protein.
    
 
 0.722
H3GSW0_PHYRM
Glucanase; Belongs to the glycosyl hydrolase family 6.
    
 
 0.710
H3GTZ6_PHYRM
Uncharacterized protein.
    
 
 0.665
H3GTZ7_PHYRM
Uncharacterized protein.
    
 
 0.665
H3GCI7_PHYRM
Uncharacterized protein.
    
 
 0.655
H3HBB4_PHYRM
Uncharacterized protein.
    
 
 0.655
H3G8C0_PHYRM
Uncharacterized protein; Belongs to the heat shock protein 70 family.
    
   0.599
H3GXH9_PHYRM
Na_H_antiporter domain-containing protein.
    
   0.599
H3GAC4_PHYRM
Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family.
   
    0.588
H3GZV9_PHYRM
Uncharacterized protein.
    
 
 0.562
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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