STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3HCR7_PHYRMUncharacterized protein. (120 aa)    
Predicted Functional Partners:
H3GKJ4_PHYRM
Uncharacterized protein.
    
 
 0.943
H3G7A8_PHYRM
N-acetyltransferase domain-containing protein.
    
 
 0.941
H3G547_PHYRM
N-acetyltransferase domain-containing protein.
    
 
 0.822
H3HD94_PHYRM
N-acetyltransferase domain-containing protein.
    
 
 0.822
H3GD79_PHYRM
zf-Tim10_DDP domain-containing protein.
   
    0.543
H3G809_PHYRM
Uncharacterized protein.
   
    0.542
H3GGJ3_PHYRM
zf-Tim10_DDP domain-containing protein; Belongs to the small Tim family.
   
    0.512
H3G535_PHYRM
Sm domain-containing protein.
   
    0.487
H3G8J2_PHYRM
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
  
 0.416
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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