STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3HDR4_PHYRMSGL domain-containing protein. (217 aa)    
Predicted Functional Partners:
H3G978_PHYRM
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.
  
  
 0.680
H3GN06_PHYRM
FDX-ACB domain-containing protein.
   
  
 0.672
H3G973_PHYRM
Ribosomal_L2_C domain-containing protein.
   
   0.651
H3G8J2_PHYRM
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
  
 0.640
H3HA42_PHYRM
HRDC domain-containing protein.
   
 
 0.630
H3G8V6_PHYRM
S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.
   
  
 0.621
H3G971_PHYRM
S4 RNA-binding domain-containing protein.
   
  
 0.621
H3GAM0_PHYRM
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
   
  
 0.619
H3G6Q2_PHYRM
Tr-type G domain-containing protein.
  
  
 0.618
H3GK30_PHYRM
Tr-type G domain-containing protein.
  
  
 0.618
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.