STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
macB_14Macrolide export ATP-binding/permease protein MacB. (226 aa)    
Predicted Functional Partners:
macB_1
Macrolide export ATP-binding/permease protein MacB.
 
 0.980
macB_9
Macrolide export ATP-binding/permease protein MacB.
 
 0.980
macB_6
Macrolide export ATP-binding/permease protein MacB.
 
 0.975
CUN30434.1
Acidobacterial duplicated orphan permease.
 
 
 0.900
CUN23550.1
ABC exporter transmembrane subunit%2C DevC protein.
  
 
 0.898
macA
Macrolide-specific efflux protein macA precursor.
  
 
 0.834
lolD_3
Lipoprotein-releasing system ATP-binding protein LolD.
 
    
0.815
CUN30446.1
Multidrug efflux system subunit MdtA.
 
 
 0.779
xynD
Arabinoxylan arabinofuranohydrolase precursor; Belongs to the glycosyl hydrolase 43 family.
       0.773
xynZ
Endo-1%2C4-beta-xylanase Z precursor.
  
  
 0.637
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.