STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001039045_00390Unannotated protein. (184 aa)    
Predicted Functional Partners:
GCA_001039045_02828
Unannotated protein.
  
     0.757
GCA_001039045_01970
Unannotated protein.
    
 0.637
GCA_001039045_00389
Unannotated protein.
       0.528
GCA_001039045_00038
Unannotated protein.
  
     0.516
GCA_001039045_00621
Unannotated protein.
  
     0.438
GCA_001039045_00391
Unannotated protein.
       0.428
Your Current Organism:
Lactobacillus herbarum
NCBI taxonomy Id: 1670446
Other names: CCTCC AB2015090, DSM 100358, L. herbarum, Lactobacillus herbarum Mao et al. 2015, Lactobacillus sp. TCF032-E4, strain TCF032-E4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.