STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_0603Serine carboxypeptidase; Identified by match to protein family HMM PF00450. (503 aa)    
Predicted Functional Partners:
CPS_0219
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 
 0.649
aldH
Fatty aldehyde dehydrogenase; Identified by similarity to SP:Q56694; match to protein family HMM PF00171.
  
 
 0.581
CPS_3167
Putative peptidase; Identified by match to protein family HMM PF00326.
  
     0.544
CPS_0602
Hypothetical protein; Identified by Glimmer2; putative.
       0.475
CPS_1822
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.459
CPS_1449
Identified by match to protein family HMM PF00701; Belongs to the DapA family.
  
     0.447
CPS_3629
Identified by match to protein family HMM PF01979.
  
     0.430
CPS_1450
Putative proline racemase; Identified by similarity to GP:6900003; match to protein family HMM PF05544; Belongs to the proline racemase family.
  
     0.420
CPS_4230
Hypothetical protein; Identified by Glimmer2; putative.
    
 0.414
CPS_4217
Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171.
  
     0.401
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.