STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_1864Identified by match to protein family HMM PF02366. (479 aa)    
Predicted Functional Partners:
CPS_1863
Identified by similarity to GP:24250763; match to protein family HMM PF00535.
  
 0.978
CPS_1866
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
 
  
 0.765
CPS_1865
DNA-binding response regulator; Identified by similarity to GP:1729783; match to protein family HMM PF00072; match to protein family HMM PF00486.
 
   
 0.738
CPS_1862
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.675
CPS_2096
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to OMNI:NTL01RS1320.
 
  
 0.532
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 0.457
CPS_1867
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01OI1051; match to protein family HMM PF05742.
       0.417
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.