STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2672Conserved hypothetical protein; Identified by similarity to OMNI:CC2974. (129 aa)    
Predicted Functional Partners:
dmpI
4-oxalocrotonate tautomerase; Identified by similarity to SP:Q01468; match to protein family HMM PF01361; match to protein family HMM TIGR00013; Belongs to the 4-oxalocrotonate tautomerase family.
 
     0.906
CPS_2673
Putative glutathione S-transferase; Identified by similarity to SP:P39100; match to protein family HMM PF02798; Belongs to the GST superfamily.
 
   0.876
CPS_2674
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
 
     0.572
CPS_4013
Putative membrane protein; Identified by match to protein family HMM PF06779; match to protein family HMM PF07690.
  
    0.538
CPS_3596
Putative transcriptional regulator; Identified by match to protein family HMM PF01638.
 
     0.486
CPS_0800
Conserved hypothetical protein; Identified by similarity to OMNI:CC0158.
  
     0.452
CPS_1651
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
     0.420
CPS_0798
Transcription regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.409
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.