STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3356Redox-active disulfide protein 2. (78 aa)    
Predicted Functional Partners:
CPS_3357
Putative permease; Identified by match to protein family HMM PF03773.
 
  
 0.945
msrAB
Peptide methionine sulfoxide reductase MsrA/MsrB; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 0.930
CPS_2452
Putative permease; Identified by match to protein family HMM PF03773.
 
  
 0.807
CPS_3358
Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022; match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
  
 0.776
CPS_4074
Putative permease; Identified by match to protein family HMM PF03773.
 
  
 0.764
CPS_0236
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
 0.658
gap3
Glyceraldehyde-3-phosphate dehydrogenase, type I; Identified by similarity to SP:P09124; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
 
 0.580
CPS_3474
Antioxidant, AhpC/Tsa family; Identified by match to protein family HMM PF00578.
  
 0.537
ahpC
Alkyl hydroperoxide reductase, subunit C; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
 0.537
CPS_4355
Identified by match to protein family HMM PF00462; match to protein family HMM PF00578.
  
 0.534
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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