STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4201Polysaccharide biosynthesis protein; Identified by similarity to GP:11464539; match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family. (390 aa)    
Predicted Functional Partners:
fcl
NAD-dependent epimerase/dehydratase family protein; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
 
 0.990
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
 
 0.983
CPS_0308
UDP-N-acetylglucosamine 2-epimerase/UDP-N-acetyl-D-mannosamine dehydrogenase; Identified by similarity to SP:P27829; match to protein family HMM PF00984; match to protein family HMM PF02350; match to protein family HMM PF03721; match to protein family HMM TIGR00236; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
  
 0.961
CPS_2092
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF02719; match to protein family HMM PF07993.
  
 0.782
CPS_0594
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF02719; match to protein family HMM PF07993.
  
 0.721
CPS_4202
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
  
 0.604
CPS_3644
Identified by similarity to SP:P39861; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.567
CPS_1863
Identified by similarity to GP:24250763; match to protein family HMM PF00535.
  
 0.555
CPS_2329
3-demethylubiquinone-9 3-methyltransferase, truncated; Identified by similarity to SP:P17993.
  
  
 0.549
CPS_2097
neuB protein; Identified by match to protein family HMM PF01354; match to protein family HMM PF03102.
 
  
 0.516
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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