STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4680Conserved hypothetical protein; Identified by similarity to OMNI:SO3502; match to protein family HMM TIGR02001. (221 aa)    
Predicted Functional Partners:
CPS_1024
Conserved hypothetical protein; Identified by similarity to OMNI:SO3512.
  
     0.558
CPS_0151
Conserved hypothetical protein; Identified by similarity to OMNI:SO3512.
  
     0.532
CPS_4679
Putative transcriptional regulator; Identified by match to protein family HMM PF01381; match to protein family HMM PF07883.
       0.481
CPS_0240
Conserved hypothetical protein.
  
     0.460
CPS_1977
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.433
CPS_0263
Putative iron-regulated membrane protein; Identified by similarity to OMNI:NTL01XA0270; match to protein family HMM PF03929.
  
     0.429
CPS_4681
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM PF07494; match to protein family HMM PF07495; match to protein family HMM TIGR00254.
       0.402
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.