STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4785Hypothetical protein; Identified by Glimmer2; putative. (227 aa)    
Predicted Functional Partners:
CPS_0637
Conserved hypothetical protein; Identified by similarity to OMNI:SO0615.
  
     0.763
CPS_3480
Conserved hypothetical protein; Identified by similarity to GP:28805963.
  
     0.735
motX
Sodium-type flagellar protein MotX; Identified by similarity to GP:507737.
  
 
   0.722
CPS_2566
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.717
CPS_2256
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches.
  
     0.715
CPS_1205
Sensor histidine kinase; Identified by match to protein family HMM PF00672; match to protein family HMM PF02518.
  
     0.623
CPS_1506
Flagellar protein FliJ; Identified by similarity to SP:P26463; match to protein family HMM TIGR02473.
 
   
 0.620
CPS_1203
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA00759.
  
     0.609
CPS_1470
Putative lipoprotein.
  
     0.589
CPS_1468
Putative lipoprotein.
  
     0.573
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.