STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_5015Putative polysaccharide biosynthesis protein; Identified by similarity to SP:P39860. (446 aa)    
Predicted Functional Partners:
CPS_3411
Putative phenylacetate-coenzyme A ligase; Identified by similarity to GP:6715111.
  
  
  0.968
CPS_5016
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
     0.876
CPS_5018
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
     0.766
CPS_5022
Identified by match to protein family HMM PF01522.
 
     0.660
CPS_5017
Identified by match to protein family HMM PF01522.
 
     0.647
CPS_4990
Putative membrane protein; Identified by similarity to OMNI:NTL01NS0496; match to protein family HMM TIGR02602.
 
     0.610
CPS_5012
Putative polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.
 
     0.604
CPS_5014
Hypothetical protein; Identified by Glimmer2; putative.
       0.566
CPS_5011
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03CP1869.
 
     0.561
CPS_5020
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
     0.534
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.